Backup of Database not getting everything

[baconzoo]

Let me try to explain:
If a member uploads an avatar or profile pic,
If I use the admincp to upload avatars,
If I use backupDB to create a SQL file on my server.

My server is setting those files to Apache as the group and User when it needs to specify my Username and group.
The file permissions are wrong as well
rw - - instead of
rw r- r-

The lame part about this is when I try to backup those files I get a permissions error because I'm not Apache. I have to resave those files localy and re-upload them useing FTP and reset their permissions. LAME, this shouldn't be...