Personally i think it all depends on what type of "website" you are trying to become, if you intending on becomming just a forum with a nice introductary homepage then of course the combination of vBadvanced CMPS and an installation into the root directory would suit you well. But if you are intending on becomming much more of a portal resource with additional features such as Galleries, Directories, Blogs etc .. then moreso for organisational and navigational purposes it is probally best to give all these entities a seperate folder.
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