[iojam]

And what about this in the vba addon script?

You should uncomment this line as desribed (or enter it manually like $vba_url = 'http://www.example.com'; )

Also, I run a second vba front page in a subdomain. Is that going to get left out?

The sitemap should not contain URLs from different domains. So, if you have the page from other subdomain at your site, don't include it.

One thing I notice is the links to the files in the admin script still show them as being under the forum dir.

The relative URL for vBadvanced pages is defined using $vba_url variable - so, when it is corrected as specified above, it should be ok.