Set the option to yes, and see if it saves it. If it does, then change it to No, it should save it too.
As you can see from the code, the whole section which issues the warning, is enclosed in a conditional, which checks if $vboptions['warn_automaticpm'] == 1, that is if the option is set to yes. If it is set to no, then that whole section never gets executed.
Rgds
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