Zachlee, I am not sure what you mean.
If you manually edited the files... did you do it on the run time files or the ones moved to gish/gal/3.0?
If you edited the ones in gish, then those are the ones to move over. If you manually edited your actual files, then dont copy the gish ones over.
006 - whenever you do anything in the GAL_admin page, it rebuilds the datastore of links. It pulls the links from the geek_autolink table. Delete those and all will pretty much go bye bye
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