Huh, well there you go... I just tried importing the settings, template, and templateset tables again, but was frustrated because only the master templateset was being displayed, none of my modifications.
So I checked in the styles section, and the master templateset was coming up for header, footer etc. I went to my SQL table, looked in the style table, and noticed that the templateset there wasn't 1, so I changed it and voila, things look back to normal!
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