Hmm...well, I guess one possibility is that the "search plugins" mod wouldn't find it if the problem code is in an included file. And if the code is in more than one plugin (or included by more than one) then you might not find it by disabling plugins one by one (or five by five). (Edit:...oh, unless you ultimately disabled them all, then I guess it should have gone away at some point).
Of course it could also just be that I'm wrong.
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