You don't have to edit a single file, maybe a few templates, but that's it...just go into your Admin CP, scroll down to the bottom of the features list, find Styles -> Edit -> Fonts/Colors/etc.
Then fix your colors that way...otherwise, there are absolutely NO other files you need to edit, unless of course you want to change the Admin CP/Mod CP's look, then you just need to edit the cp.css file,but, i'll stop confusing you now =P
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