'header' is inside the body tags, I believe. But if it isn't in the html source now then I don't think changing the template will make any difference.
If you have more than one style, are you sure you're viewing the same style as the template you modified?
Try simplifying things, like try just setting $php_include to a string to see if it's the buffering or the include that's the problem (I see where it says the file was included, so I don't expect it's that).
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