Most ftp programs like flashfxp, cuteftp & filezilla, let you use the standard "ctl + s" to save, it will reupload the file for you once its prompted to save.
I have my program as follows:
1. Connect via FlashFXP
2. Right click & select edit
3. FlashFXP opens Edit++ for me, as its my defautl editor
4. ctl +s & its resaved to the server.
I would also suggest that your careful with what editor you use, notepad is fine. Do not use a built in editor such as the one provided thru for example Cpanel, as it will add white spacing to the end of the file & corrupt the config file.
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