Ok, well you could first show us a list of your mods, secondly you can try installing my Ban Spiders By Useragent and minimise the spiders that are trawling your site and just leave the likes of google...etc accessing it this should help bring your usage down (the mod says vb3.7.x (the version you would download) but should work on any version, if you have trouble with it let me know.
Also ask your host for a list of processes that are taking the usage (they can do this by using the TOP command in ssh or viewing Apache status in WHM) and give that to you so you can analyse it, you'd need a few snapshots over the day to get a good feel for what's creating the issues, also ask your host to turn off mysql persistant connections for you, that might help a little.
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