I had to do something very similiar to this on my test rig quite recently. Before you do anything I'd advise you to backup the database using mysqldumper. it's really straightforward to use, just follow the instructions in the manual! Shut down your board and make the backup then you can delete the install (retaining your config.php) and re-install the VB software to the same version that you have on there now. It should all work perfectly fine!
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