Could be a few things... first if you are using a customized style some hooks might be missing or be in the wrong spot. I would look in the headinclude template for the hooks:
headinclude_javascript, custom_css_links, and custom_css_list.
Make sure they exist in the template.
If they both exist the lack of the Javascript bar is most likely to another instance of jquery being called. Look at the instructions in the top thread under "Known Conflicts."
Also if the hooks are there and the non-animated version isn't working it could be your style has customized poll graphics. Some customized poll styles don't work with this mod since it tries to use the default poll css to show the non-animated progress bar.
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