Well there's 2 possible places for viruses and other malicious code to be, the files and the database. If you've already re-uploaded all the original files (and I don't know that you have) and you still have the problem then the issue must be in the database. There are two places to check in the database- templates and plugins, A template or a plugin was added or altered. You can go back to the default template and see if you still have the problem in which case you need to check the plugins.
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