UPDATE -
I found the issue, in the images folder of the download there is an htaccess file in there and I had uploaded that file as well. After deleting all files, uninstalling and then just uploading the misc folder in the images folder all is good now.
Sheew, thought I was being hacked again for the third time in less then 2 weeks. Yes I did move my site to a new server and no attempts yet (fingers crossed, lol)
Sorry for the confusion