I personally wouldn't suggest running windows servers at all...
As for linux and game servers apache plays ball perfectly fine with them; just make sure that the gameservers don't listen on port 80/443 and you'll be fine. Better yet get a secondary ip address from your host and use that for your game servers.
If you need any assistance with the linux side of it; i'm currently running 4 l4d2 servers on my machine without issue, so can give you some pointers if you need 'em
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