AndrewD,
follow-up to this error: i talked to my hoster techs, they say mysql is "going away" because such an update query takes more than a minute to complete and their cron script just kills mysql process. while i think it's a problem on mysql side - i cannot imagine why simple update request in a memory table could take this much time - i tried to replicate this problem and found that it appears after an user downloads some file and stays on the entry page for some time. can it be of any help?
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