Nothing in this hack causes links to open in a new window, save for the one on the EXTERNAL_LINK template, which I believe has already been updated, and is easily modified. But it doesn't cause any of the links in signatures, posts, visitor comments, or anything else, to open in a new window/tab. That is vB's default behavior when parsing links in posts, etc.
Regarding differences between this hack and the other: I'm not familiar with the other one, so I couldn't tell you, but I notice you're asking for differences other than the redirect page. The redirect page may be the only major difference, but as aspen0 has explained, it's the entire point. I won't repeat his descriptions of how link weight is distributed, as they're still there for anyone to see and he explains it better than I can, but it bears mentioning.
I'd be glad to help you debug this hack if you'd like to contact me privately and give me some level of access. Suffice to say this has been tested on several different versions and the code itself is pretty straightforward, so I should be able to determine rather quickly if perhaps something went wrong during installation, or if some other mod is in conflict.
I am still somewhat curious about your reference to the whitelist, though. The whitelist exists to stop links from being run through the redirection page. Are you saying you added your URL to the whitelist even though this wasn't happening?
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