Ahh, I see! Sorry for not seeing that.
Notifications are using in the navbar template. You can find the template by doing this - vboptions > General Settings > Add Template Name in HTML Comments > set to Yes . Then go back to your page and view the source code and you will see the name of the template called around your part of the code. Sometimes the template is the one mentioned at the very top of the page source.
Once you find the template, compare the code in the non-working one to the working one.
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