This is what you do.
Go into your AME CP in admin CP.
Choose
AME CP => Tools => Rebuild => Posts
Then a new window will appear.
#1 option "remove AME codes" should be marked YES.
#2 option "ignore previous" marked NO
Other options set to your liking.
then press 'Save' button at the bottom.
Let the tool run its course. When it is finished go BACK to the same spot AME CP => Tools => Rebuild => Posts
This time, #1 option should be marked NO. Otherwise Leave your settings the same. Run the tool again. They should all show now.
As far as I can tell, you will have to do this any time you do 'refresh post cache' in update/counters
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