Well we managed to not figure it out per se, but find a way to get round it. The problems started when we created a new style, and because we didnt want the same footer for all the pages, instead of including $footer for each template, we copied and pasted what was in the footer template and edited it slightly to suit what we wanted for each page. However after trying to figure out the problem of the no-pop-up, we narrowed it down to this problem. In fact, even if we copied the EXACT SAME CODE writte in the footer template, the popup wouldnt work. We HAD to have $footer written out explicitly. Perhaps this is a obvious error but since we're new to this we weren't aware of this. So we had to edit the footer code and include it in each template, and accept that the footer of each page wasnt exactly how we wished.
Thanks for the help though. I feel sick after staring at the screen for so long!
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