You are talking about the different size of the posts/threads table? Unless they are all in the same table, or you fix the width for those columns, they will be different.
As for the other, it is probably a different template and you haven't modified it. Do this - vboptions > General Settings > Add Template Name in HTML Comments > set to Yes . Then go back to your page and view the source code and you will see the name of the template called around your part of the code. Then modify that template to be modified like you did the others.
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