There has been no change AFAIK in the recommended storage engine. Unless i missed something we still do recommend MyIsam as storage engine.
Tabes will be created by vBulletin using the default storage engine as set for the database. A few tables that need a specific storage type (some HEAP/In memory tables, and some forced to MyIsam) and will always be created using that storage engine, regardless of the database default.
PS The only thing that changed is that newer MySQL versions (on some Ooperting Systems) now use InnoDB as default for a database unless specified otherwise.
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