Ok. You are not making sense now. If it's going to be a 1 click install, and not lose any functionality why ask which type to goto? As in option 1 or option 2. Based on your reply, that isn't the case.
My thoughts...
When upgrades happen, you still will need to re-upload the files, images and XML. So I don't see how much changes. Just less needed user wise to "install" the plugin.
I use the /me command. Hardly any of the others. Are the commands causing the issue from going to a 1 click install? If so, add that as an "addon" then

So the base install has all minus the commands. If they want commands they add it.