I loathe mysqldump, and always do backups via moving the raw .frm,MYI and MYD files around, including using mysqlhotcopy.
Restoring your db should not be an issue, I have restored from a fatal disk crash from these backups.
It would really help us help you if you mentioned exactly what errors you are getting, and also if there are any errors in the mysql error file
Did you lose my.cnf as well?
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