The hack will work the same regardless of where you put it. vbSEO recommends placing it at the end of the navbar and lately, I prefer that location as well myself. That said, it will work in either the navbar or header templates. If you are concerned about SEO impact of having the content on every page I suggest you turn the guest message into an image, the others can be left as text since bots can't see them in the first place.
And yes, this works with 3.6.5
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