ok, something I just noticed. In your footer template (I missed it before) you have the end column code in there twice
Code:
<tr>
<td class="footer"><div class="sdcopyright"> </div></td>
</tr>
</table>
</td>
</tr>
</table>
</td>
</tr>
</table></body>
<!--EndSdFooter-->
<!-- Left Column Code -->
</td></tr>
</table>
</td></tr>
</table>
<!-- End Left Column Code -->
Delete the one that appears here.
After deleting that, try it again and report back with what happens. If possible, provide a link to your site and a test login if it is only affecting pages that are not accessible to guests.
Also for debugging purposes, please enable HTML comments in your source as a temporary measure. This is done via vBOptions > General Settings > Add Template Name in HTML Comments > YES