What would help us work it out is:

Link to your forum OR
A screenshot of the problem
Other mods you have installed which could cause this problem.

You may feel you have every right to behave however you want, but the fact is you need to consider that we make these Themes completely out of the goodness of our hearts. The absolute least you can do is to come here and ask for help in a considerate and respectful manner. If you cannot do this then why on earth would you think anyone would want to help you, life is not all about you.
As Mike has stated, please provide us with the link to your site so we can see the problem, a screenshot is no use, I will need to see the problem on a live environment as I may need to view the page source code to find the problem.
I am wondering if you are meaning the categories are uneven, this can happen width fixed width Themes and separated categories, if that is the problem try this:
Set your last Thread length to 20, this is to align the forums in compensation for the split categories, follow this path:
AdminCP
vBulletin Options
Forum Listings Display Options
Last Thread Title Maximum Displayed Characters
set value to 20

I'm reuploading the skin and I will let you see it. My forum link is MLGForums.com and I have set the length to 20, we will see if it works :)

EDIT: It does the same thing, please take a look when you can. I have set it as default skin so you may see.

EidolonAH, nice work.:)

wow!! I find great skins at vb.org nowadays great work mate!! I love your skin..

Wow, it really doesn't like being on your site at all does it, what mod's have you got installed?
I've uninstalled and re-installed this Theme 5 times on my dev site now and it installs fine each time. Looking at the FF html checker I can see 35 warnings, a mod you have installed will be causing it. If you tell me what you have installed I can look at them and see if I can find the problem.

Alright.

Cyb - Advanced Forum Statistics 6.6.1 Cyb - Advanced Forum Statistics

Cyb - PayPal Donate 4.8.2 Cyb - PayPal Donate

Cyb - Sub-Forum Manager 2.5.1 Cyb - Sub-Forum Manager

Doublepost Prevention Plus 1.3 This Modification prevents doubleposts by merging post together, if the last poster of a thread tries to post again.

Gamercard Profile Block 1.0 Displays your members gamercard in their profile.

Members who have Visited 3.8.002 Display members who have visited the forum.

Sig Of The Week 2.0 Hack to display sotw on forumhome

Spider Display 2.0.0 Show the spiders browsing your board in the What's Going On box of your Forum Home Page.

vB Ad Management 5.02 vB Ad Management engine.

vBSEO :: Sitemap Generator 2.5 Generate a Google & Yahoo Sitemap for your Forums

I don't stand a chance checking all of those mod's for code problems, let us try this next, through your ACP disable each of those mod's one by one, checking the forum index after each until the forum index displays properly. When you have targeted the mod that is causing problems please come back and tell me which one it was and then I can go from there.

That didn't help, it still does it even with all of them disabled. :( any other ideas?

These three directly or indirectly affect forumhome code, I have a strong feeling it is the sub forum manager, as it looks as if your sites threads are being treated as sub forums.

Back up the settings and make sure you retain a copy of the mods and completely uninstall those three, see if this fixes it.

Also, you can quickly disable the mod system by adding a line at the top of config.php